# AbdulHannan  M.

> Engineering Student

Location: Fremont, California, United States
Profile: https://flows.cv/abdulhannan

## Work Experience
### Performance Engineering Intern @ National Energy Research Scientific Computing Center (NERSC)
Jan 2026 – Present
agentic hpc job analyses at scale

### Software Engineer @ Stanford University School of Engineering
Jan 2025 – Present | Stanford, CA
data infrastructure for concurrent ingestion and vector retrieval at scale

### Bioinformatics & ML Intern @ Stanford University School of Medicine
Jan 2025 – Present | Stanford, California, United States
Joined Dr. Katja Weinacht’s lab, a leader in iPSC-derived thymic cell research, to support efforts in understanding thymic biology through high-dimensional data analysis. Began by generating and visualizing insights from bulk and single-cell RNA-seq datasets using R (Seurat, clusterProfiler, WGCNA) and Python (matplotlib, pandas), before transitioning into a more integrated machine learning role developing computational models of thymic cell development and differentiation.

Perturbation Prediction System (multiDCP, Bulk RNA-seq): Developed an end-to-end system for predicting transcriptional responses to diverse perturbation inputs. Trained multiDCP on tens of thousands of thymic bulk RNA-seq samples and built a ranking framework that highlights perturbations most likely to achieve specified gene expression goals.

Biomni (Open-Source Bioinformatics AI Agent): Deployed and extended Stanford’s AI agent for natural language-driven data analysis by repurposing a MacBook server for lab-wide access. Expanded capabilities by writing new MCPS modules (e.g., WGCNA, Hardy–Weinberg analysis). Built server-side infrastructure with Docker to support long-running jobs and allow multiple researchers to run analyses concurrently, and integrated Kubernetes autoscaling to dynamically provision containers during peak demand, enabling smooth, multi-user performance.

### Peer Tutor @ Chabot College
Jan 2025 – Present | Hayward, California, United States
calculus series, data structures, and intro to cs courses

### Founder of Machine Learning Club @ Chabot College
Jan 2025 – Present | Hayward, California, United States
Founded and lead a project-based club designed to introduce students to higher-division computer science and machine learning early in their academic careers. Organize weekly meetings covering core ML topics with a strong emphasis on the underlying mathematics and hands-on programming in TensorFlow and scikit-learn. Guide members in reading and discussing scientific literature to build research-level exposure alongside practical skills.


## Education
### Associate's degree in Computer Science
Chabot College

### Summer in Computer Science
University of California, Berkeley


## Contact & Social
- LinkedIn: https://linkedin.com/in/abdulhannan-m-2a5135212

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Source: https://flows.cv/abdulhannan
JSON Resume: https://flows.cv/abdulhannan/resume.json
Last updated: 2026-04-10