# Andres Bonilla

> Software Engineer | Baylor Genetics

Location: Sunnyvale, California, United States
Profile: https://flows.cv/andresbonilla

I am a software developer with experience working on a wide variety of projects, including data-intensive full-stack web development, constructing an automated QA infrastructure, and molecular modeling simulation software. I work in Python, C# and C++, and am always looking to learn more technologies and languages to expand my development toolkit.

## Work Experience
### Software Engineer @ Baylor Genetics
Jan 2024 – Present
Main engineer of a Python-based backend for a web application enabling scientists to analyze and interact with genetic variant data. Designed and implemented RESTful APIs for efficient data retrieval and updates in SQL databases using SQLAlchemy. Integrated backend functionality with a TypeScript-based UI. Orchestrated continuous deployment pipelines with Azure DevOps, leveraging Nginx and Gunicorn on Linux servers. Optimized SQL database design and management to ensure effective data organization and accessibility. Applied advanced algorithm design and software architecture principles to deliver a scalable, high-performance solution aligned with business objectives.

### Analytical QA Software Engineer @ Baylor Genetics
Jan 2023 – Jan 2024
Headed development of a modular Docker-based application streamlining automated testing of 
bioinformatics pipeline metrics and Laboratory Information Management Software APIs and databases. Leveraged Azure DevOps to architect and execute pipelines, while creating informative dashboards to 
present results and diagnostics derived from application execution. Collaborated with multiple internal and external development teams to add new functionality and integrate existing applications into the automated QA infrastructure.

### Researcher, Software Developer @ Michigan Medicine
Jan 2021 – Jan 2023 | Ann Arbor, Michigan, United States
Research relating to the possible relationship between kinesin motor activity and tubulin post-translational modifications. Developed microtubule breaking functionality for open-source cytoskeletal simulation software, cytosim, to reflect results seen in in-vitro experiments. Utilized C++, R, and bash scripting.

### Data Analyst @ Stanford University School of Medicine
Jan 2022 – Jan 2022 | Palo Alto, California, United States
Data and statistical analyst for a study correlating the symptoms of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) to post-acute COVID-19 symptoms. Analysis consisted of principal component analysis (PCA), which allowed us to identify symptom clusters among a patient population.

### Data Analyst @ Stanford University School of Medicine
Jan 2020 – Jan 2021 | Palo Alto, California, United States
Performed data analysis for a published paper which investigated the usage of Aripiprazole as a potential treatment for Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS).


## Education
### Bachelor of Science - BS Honors in Molecular Biology and Computer Science
University of Michigan


## Contact & Social
- LinkedIn: https://linkedin.com/in/andres-bonilla-b6525a204

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Source: https://flows.cv/andresbonilla
JSON Resume: https://flows.cv/andresbonilla/resume.json
Last updated: 2026-04-11