Technical Lead on the IDseq web applications team (~7 FTEs). Helped build a hosted bioinformatics platform for detecting infectious diseases globally, using metagenomic and consensus genome data. (https://idseq.net/)
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Led a team of CZI engineers that built lab info management system (LIMS) software for a temporary emergency COVID-19 extension of the UCSF Clinical Laboratories adjacent to CZ Biohub. Led to CLIA validation and >150,000 PCR tests processed. (https://chanzuckerberg.com/blog/a-model-for-the-nation-building-a-covid-19-testing-lab-in-only-eight-days/)
Built a public data sharing portal around sequencing analysis from one of the earliest known cases of international transmission of COVID-19 in January 2020. (https://www.facebook.com/zuck/posts/10111639945787131)
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Built first version of IDseq's geographical location and mapping features.
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Built first versions of IDseq's observability features (monitoring and alerts, structured logging, analytics ETL).